MolNFT v1 · #118592 · protein

Structure of calexcitin-GD3+ complex.

5F6T: “Structure of calexcitin-GD3+ complex.”. X-ray diffraction, 2 ligands (CA, GD), 1 pocket (best druggability 0.39). MolNFT v1 #118592 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5F6T
Type: protein
Length: 185 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Calexcitin
UniProt: O76764
Ligands: CA, GD
Pockets: 1 · best druggability 0.39

Structure

x-ray diffraction · 1 distinct chain · 65% helix, 3% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Calexcitin	protein	185	65% helix, 3% strand	O76764

Ligands and binding sites

CA · Calcium ion · metal · 2 copies · chains A
GD · Gadolinium atom · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	71	0.39	0.78	15	empty

Compared structures

5F6T · Structure of calexcitin-Gd3+ complex. · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O76764
Elsewhere: RCSB PDB 5F6T · PDBe 5F6T · UniProt O76764

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