MolNFT v1 · #118142 · DNA
Lambda-RU(TAP)2(DPPZ)]2+ bound to D(TTGGCGCCAA)
5ET2 · DNA (5'-D(*(THM)P*TP*GP*GP*CP*GP*CP*CP*AP*A)-3'): “Lambda-RU(TAP)2(DPPZ)]2+ bound to D(TTGGCGCCAA)”. X-ray diffraction, 2 ligands (RKL, BA). MolNFT v1 #118142 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5ET2
- Type
- DNA
- Length
- 10 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*(THM)P*TP*GP*GP*CP*GP*CP*CP*AP*A)-3')
- Ligands
- RKL, BA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*(THM)P*TP*GP*GP*CP*GP*CP*CP*AP*A)-3') | dna | 10 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Compared structures
- 5ET2 · Lambda-Ru(TAP)2(dppz)]2+ bound to d(TTGGCGCCAA) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5ET2 · PDBe 5ET2
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