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Lambda-RU(TAP)2(DPPZ)]2+ bound to D(TTGGCGCCAA)

Analyse Lambda-RU(TAP)2(DPPZ)]2+ bound to D(TTGGCGCCAA) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5ET2
Type: DNA
Length: 10 nucleotides
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA (5'-D(*(THM)P*TP*GP*GP*CP*GP*CP*CP*AP*A)-3')
Ligands: RKL, BA

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DNA (5'-D((THM)PTPGPGPCPGPCPCPAPA)-3')	dna	10	—	—

Ligands and binding sites

RKL · Ru(tap)2(dppz) complex · ligand · chains A
BA · Barium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 1 modified (nucleotide modification).

Compared structures

5ET2 · Lambda-Ru(TAP)2(dppz)]2+ bound to d(TTGGCGCCAA) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 5ET2 · PDBe 5ET2

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