MolNFT v1 · #118068 · protein
Crystal structure of human desmoglein-3 ectodomain
5EQX: “Crystal structure of human desmoglein-3 ectodomain”. X-ray diffraction, 3 ligands (NAG, MAN, CA). MolNFT v1 #118068 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5EQX
- Type
- protein
- Length
- 439 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Desmoglein-3
- UniProt
- P32926
- Ligands
- NAG, MAN, CA
Structure
x-ray diffraction · 1 distinct chain · 3% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Desmoglein-3 | protein | 439 | 3% helix, 41% strand | P32926 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains A
- MAN · alpha-D-mannopyranose · sugar · 3 copies · chains A
- CA · Calcium ion · metal · 8 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 6 glycan (O-glycosylation, N-glycosylation, glycosylation).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P32926
- Elsewhere: RCSB PDB 5EQX · PDBe 5EQX · UniProt P32926
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