MolNFT v1 · #118027 · protein
Structural insights into the interaction of P97 N-terminus domain and vbm motif in rhomboid protease, RHBDL4
5EPP · Transitional endoplasmic reticulum ATPase: “Structural insights into the interaction of P97 N-terminus domain and vbm motif in rhomboid protease, RHBDL4”. X-ray diffraction. MolNFT v1 #118027 on GenesisL1: 3D structure, binding…
- PDB
- 5EPP
- Type
- protein
- Length
- 185 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Transitional endoplasmic reticulum ATPase; Rhomboid-related protein 4
- EC
- 3.6.4.6, 3.4.21.105
- UniProt
- P55072, Q8TEB9
Structure
x-ray diffraction · 2 distinct chains · 21% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transitional endoplasmic reticulum ATPase (EC 3.6.4.6) | protein | 170 | 15% helix, 42% strand | P55072 |
| B | Rhomboid-related protein 4 (EC 3.4.21.105) | protein | 15 | 87% helix, 0% strand | Q8TEB9 |
Interfaces
1 interface between chains.
- A–B · 706 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
- 5EPP · Structural Insights into the Interaction of p97 N-terminus Domain and VBM Motif in… · the same entry in another collection · chain A against A, TM-score 1.00
- Q8TEB9 · AlphaFold monomer V2.0 prediction for rhomboid-related protein 4 (Q8TEB9) · a predicted model of the same protein · chain B against A, TM-score 0.72
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P55072
- Every structure of UniProt Q8TEB9
- Elsewhere: RCSB PDB 5EPP · PDBe 5EPP · UniProt P55072 · UniProt Q8TEB9
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