MolNFT v1 · #117674 · protein

Structure of influenza B lee PB2 cap-binding domain bound to GTP

5EFC · Polymerase basic protein 2: “Structure of influenza B lee PB2 cap-binding domain bound to GTP”. X-ray diffraction, 1 ligand (GTP), 1 pocket (best druggability 0.37). MolNFT v1 #117674 on GenesisL1: 3D structure, binding sites and…

PDB: 5EFC
Type: protein
Length: 163 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Polymerase basic protein 2
UniProt: Q9QLL6
Ligands: GTP
Pockets: 1 · best druggability 0.37

Structure

x-ray diffraction · 1 distinct chain · 23% helix, 42% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Polymerase basic protein 2	protein	163	23% helix, 42% strand	Q9QLL6

Ligands and binding sites

GTP · Guanosine-5'-triphosphate · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	82	0.37	0.76	20	GTP

Compared structures

5EFC · Structure of Influenza B Lee PB2 cap-binding domain bound to GTP · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9QLL6
Elsewhere: RCSB PDB 5EFC · PDBe 5EFC · UniProt Q9QLL6

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