MolNFT v1 · #117612 · protein
Crystal structure of the selenomethionine-substituted iron-regulated protein frpd from neisseria meningitidis
5EDF · Frpc operon protein: “Crystal structure of the selenomethionine-substituted iron-regulated protein frpd from neisseria meningitidis”. X-ray diffraction, 2 ligands (NA, AZI). MolNFT v1 #117612 on GenesisL1: 3D structure, binding…
- PDB
- 5EDF
- Type
- protein
- Length
- 224 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Frpc operon protein
- UniProt
- Q08840
- Ligands
- NA, AZI
Structure
x-ray diffraction · 1 distinct chain · 18% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Frpc operon protein | protein | 224 | 18% helix, 35% strand | Q08840 |
Ligands and binding sites
- NA · Sodium ion · metal · chains A
- AZI · Azide ion · ion · chains A
- P6G · Hexaethylene glycol · additive · chains A
- 1PE · Pentaethylene glycol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 4 modified, 1 disulfide (engineered, disulfide).
Compared structures
- 5EDF · Crystal structure of the selenomethionine-substituted iron-regulated protein FrpD from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q08840
- Elsewhere: RCSB PDB 5EDF · PDBe 5EDF · UniProt Q08840
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.