MolNFT v1 · #117606 · protein

Crystal structure of CC2-sun of mouse SUN2

5ED8 · MKIAA0668 protein: “Crystal structure of CC2-sun of mouse SUN2”. X-ray diffraction, 1 ligand (MG), 3 pockets (best druggability 0.62). MolNFT v1 #117606 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5ED8
Type: protein
Length: 245 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: MKIAA0668 protein
UniProt: Q6A022
Ligands: MG
Pockets: 3 · best druggability 0.62

Structure

x-ray diffraction · 1 distinct chain · 24% helix, 32% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	MKIAA0668 protein	protein	245	24% helix, 32% strand	Q6A022

Ligands and binding sites

MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	63	0.62	0.92	24	empty
2	169	0.53	0.79	26	empty
3	79	0.44	0.81	14	empty

Compared structures

5ED8 · Crystal structure of CC2-SUN of mouse SUN2 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6A022
Elsewhere: RCSB PDB 5ED8 · PDBe 5ED8 · UniProt Q6A022

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