Research workbench
Crystal structure of CC2-sun of mouse SUN2
Analyse Crystal structure of CC2-sun of mouse SUN2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5ED8
- Type
- protein
- Length
- 245 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- MKIAA0668 protein
- UniProt
- Q6A022
- Ligands
- MG
- Pockets
- 3 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 24% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | MKIAA0668 protein | protein | 245 | 24% helix, 32% strand | Q6A022 |
Ligands and binding sites
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 63 | 0.62 | 0.92 | 24 | empty |
| 2 | 169 | 0.53 | 0.79 | 26 | empty |
| 3 | 79 | 0.44 | 0.81 | 14 | empty |
Compared structures
- 5ED8 · Crystal structure of CC2-SUN of mouse SUN2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6A022
- Elsewhere: RCSB PDB 5ED8 · PDBe 5ED8 · UniProt Q6A022
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