MolNFT v1 · #11747 · protein

Crystal structure of ribonuclease a (ligand-free form)

1JVT: “Crystal structure of ribonuclease a (ligand-free form)”. X-ray diffraction, 2 pockets (best druggability 0.45). MolNFT v1 #11747 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1JVT
Type: protein
Length: 248 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ribonuclease a
EC: 3.1.27.5
UniProt: P61823
Pockets: 2 · best druggability 0.45

Structure

x-ray diffraction · 1 distinct chain · 21% helix, 35% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Ribonuclease a (EC 3.1.27.5)	protein	124	21% helix, 35% strand	P61823

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	122	0.45	0.77	26	empty
2	68	0.36	0.78	13	empty

Interfaces

1 interface between chains.

A–B · 317 Å² buried · 2 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 8 disulfide (disulfide).

Compared structures

1JVT · Crystal structure of ribonuclease a (ligand-free form) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P61823
Elsewhere: RCSB PDB 1JVT · PDBe 1JVT · UniProt P61823

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