MolNFT v1 · #117395 · protein
Re-refinement of the crystal structure of the plexin-semaphorin- integrin DOMAIN/HYBRID DOMAIN/I-EGF1 segment from the human integrin B2 subunit
5E6V · Integrin beta-2: “Re-refinement of the crystal structure of the plexin-semaphorin- integrin DOMAIN/HYBRID DOMAIN/I-EGF1 segment…”. X-ray diffraction, 2 ligands (NAG, FUL). MolNFT v1 #117395 on GenesisL1: 3D structure, binding sites…
- PDB
- 5E6V
- Type
- protein
- Length
- 224 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Integrin beta-2
- UniProt
- P05107
- Ligands
- NAG, FUL
Structure
x-ray diffraction · 1 distinct chain · 10% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Integrin beta-2 | protein | 224 | 10% helix, 40% strand | P05107 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains A
- FUL · beta-L-fucopyranose · sugar
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 9 disulfide, 2 glycan, 1 modified (disulfide, N-glycosylation, cyclization).
Compared structures
- 5E6V · Re-refinement of the Crystal Structure of the Plexin-Semaphorin-Integrin Domain/Hybrid… · the same entry in another collection · chain A against A, TM-score 1.00
- P05107 · AlphaFold monomer V2.0 prediction for integrin beta-2 (P05107) · a predicted model of the same protein · chain A against A, TM-score 0.90
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P05107
- Elsewhere: RCSB PDB 5E6V · PDBe 5E6V · UniProt P05107
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.