MolNFT v1 · #117184 · protein

LC8 - chica (468-476) complex

5E0M · Dynein light chain 1, cytoplasmic: “LC8 - chica (468-476) complex”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #117184 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5E0M
Type: protein
Length: 96 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Dynein light chain 1, cytoplasmic; Protein chica peptide
UniProt: Q24117
Ligands: SO4

Structure

x-ray diffraction · 2 distinct chains · 34% helix, 44% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Dynein light chain 1, cytoplasmic	protein	87	38% helix, 43% strand	Q24117
C	Protein chica peptide	protein	9	0% helix, 56% strand	—

Ligands and binding sites

SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–C · 627 Å² buried · 20 hydrogen bonds · protein-protein

Compared structures

5E0M · LC8 - Chica (468-476) Complex · the same entry in another collection · chain A against A, TM-score 1.00
Q24117 · AlphaFold monomer V2.0 prediction for dynein light chain 1, cytoplasmic (Q24117) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q24117
Elsewhere: RCSB PDB 5E0M · PDBe 5E0M · UniProt Q24117

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.