MolNFT v1 · #117114 · protein

Crystal structure of the cgmp-dependent protein kinase pkg from plasmodium vivax - apo form

5DYL · Cgmp-dependent protein kinase, putative: “Crystal structure of the cgmp-dependent protein kinase pkg from plasmodium vivax - apo form”. X-ray diffraction, 10 pockets (best druggability 0.74). MolNFT v1 #117114 on GenesisL1: 3D…

PDB: 5DYL
Type: protein
Length: 802 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cgmp-dependent protein kinase, putative
UniProt: A5K0N4
Pockets: 10 · best druggability 0.74

Structure

x-ray diffraction · 1 distinct chain · 35% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cgmp-dependent protein kinase, putative	protein	802	35% helix, 27% strand	A5K0N4

Pockets

10 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	851	0.74	0.78	69	empty
2	413	0.70	0.81	44	empty
3	181	0.62	0.83	21	empty
4	253	0.52	0.75	25	empty
5	136	0.46	0.77	19	empty

Compared structures

5DYL · Crystal structure of the cGMP-dependent protein kinase PKG from Plasmodium Vivax - Apo… · the same entry in another collection · chain A against A, TM-score 1.00
A5K0N4 · AlphaFold monomer V2.0 prediction for cgmp-dependent protein kinase (A5K0N4) · a predicted model of the same protein · chain A against A, TM-score 0.90

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A5K0N4
Elsewhere: RCSB PDB 5DYL · PDBe 5DYL · UniProt A5K0N4

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