MolNFT v1 · #116811 · protein
Crystal structure of EV71 3C proteinase in complex with compound 9
5DP9: “Crystal structure of EV71 3C proteinase in complex with compound 9”. X-ray diffraction, 1 ligand (5EX). MolNFT v1 #116811 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5DP9
- Type
- protein
- Length
- 181 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 3C proteinase
- UniProt
- A9XG43
- Ligands
- 5EX
Structure
x-ray diffraction · 1 distinct chain · 12% helix, 54% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 3C proteinase | protein | 181 | 12% helix, 54% strand | A9XG43 |
Ligands and binding sites
- 5EX · ethyl (2Z,4S)-4-[(N-{[(cyclobutylmethyl)amino](oxo)acetyl}-L-phenylalanyl)amino]-5-[(3S)-2-oxopyrrolidin-3-yl]pent-2-enoate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 5DP9 · Crystal Structure of EV71 3C Proteinase in complex with compound 9 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A9XG43
- Elsewhere: RCSB PDB 5DP9 · PDBe 5DP9 · UniProt A9XG43
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