MolNFT v1 · #116748 · protein
Structure of the glycoside hydrolase domain from salmonella typhimurium flgj
5DN4 · Peptidoglycan hydrolase flgj: “Structure of the glycoside hydrolase domain from salmonella typhimurium flgj”. X-ray diffraction, 2 ligands (IOD, CL), 1 pocket (best druggability 0.27). MolNFT v1 #116748 on GenesisL1: 3D structure…
- PDB
- 5DN4
- Type
- protein
- Length
- 159 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peptidoglycan hydrolase flgj
- EC
- 3.2.1.-
- UniProt
- P15931
- Ligands
- IOD, CL
- Pockets
- 1 · best druggability 0.27
Structure
x-ray diffraction · 1 distinct chain · 58% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptidoglycan hydrolase flgj (EC 3.2.1.-) | protein | 159 | 58% helix, 9% strand | P15931 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 57 | 0.27 | 0.72 | 9 | empty |
Compared structures
- 5DN4 · Structure of the glycoside hydrolase domain from Salmonella typhimurium FlgJ · the same entry in another collection · chain A against A, TM-score 1.00
- P15931 · AlphaFold monomer V2.0 prediction for peptidoglycan hydrolase flgj (P15931) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P15931
- Elsewhere: RCSB PDB 5DN4 · PDBe 5DN4 · UniProt P15931
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