MolNFT v1 · #116623 · protein

Crystal structure of the zuotin homology domain (zhd) from yeast ZUO1

5DJE: “Crystal structure of the zuotin homology domain (zhd) from yeast ZUO1”. X-ray diffraction. MolNFT v1 #116623 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5DJE
Type: protein
Length: 271 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Zuotin
UniProt: P32527

Structure

x-ray diffraction · 2 distinct chains · 58% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Zuotin	protein	135	59% helix, 1% strand	P32527
B	Zuotin	protein	136	57% helix, 1% strand	P32527

Ligands and binding sites

PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains A, B
BTB · 2-[bis-(2-hydroxy-ethyl)-amino]-2-hydroxymethyl-propane-1,3-diol · additive · chains B
EDO · 1,2-ethanediol · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 6 modified (engineered).

Compared structures

5DJE · Crystal structure of the zuotin homology domain (ZHD) from yeast Zuo1 · the same entry in another collection · chain A against A, TM-score 1.00
P32527 · AlphaFold monomer V2.0 prediction for zuotin (P32527) · a predicted model of the same protein · chain A against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P32527
Elsewhere: RCSB PDB 5DJE · PDBe 5DJE · UniProt P32527

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