MolNFT v1 · #116587 · protein

Fatty acid binding protein OBP56A from the oral disk of the blowfly phormia regina

5DIC · Odorant-binding protein: “Fatty acid binding protein OBP56A from the oral disk of the blowfly phormia regina”. X-ray diffraction, 1 ligand (PLM), 1 pocket (best druggability 0.79). MolNFT v1 #116587 on GenesisL1: 3D structure…

PDB: 5DIC
Type: protein
Length: 115 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Odorant-binding protein
UniProt: L8B8J6
Ligands: PLM
Pockets: 1 · best druggability 0.79

Structure

x-ray diffraction · 1 distinct chain · 68% helix, 3% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Odorant-binding protein	protein	115	68% helix, 3% strand	L8B8J6

Ligands and binding sites

PLM · Palmitic acid · ligand · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	614	0.79	0.83	45	PLM

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

5DIC · Fatty acid binding protein OBP56a from the oral disk of the blowfly Phormia regina · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt L8B8J6
Elsewhere: RCSB PDB 5DIC · PDBe 5DIC · UniProt L8B8J6

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.