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Fatty acid binding protein OBP56A from the oral disk of the blowfly phormia regina

Analyse Fatty acid binding protein OBP56A from the oral disk of the blowfly phormia… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5DIC
Type: protein
Length: 115 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Odorant-binding protein
UniProt: L8B8J6
Ligands: PLM
Pockets: 1 · best druggability 0.79

Structure

x-ray diffraction · 1 distinct chain · 68% helix, 3% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Odorant-binding protein	protein	115	68% helix, 3% strand	L8B8J6

Ligands and binding sites

PLM · Palmitic acid · ligand · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	614	0.79	0.83	45	PLM

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

5DIC · Fatty acid binding protein OBP56a from the oral disk of the blowfly Phormia regina · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt L8B8J6
Elsewhere: RCSB PDB 5DIC · PDBe 5DIC · UniProt L8B8J6

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