MolNFT v1 · #116543 · protein

Structure of the siderophore periplasmic binding protein from the fuscachelin gene cluster of thermobifida fusca in P41

5DH0: “Structure of the siderophore periplasmic binding protein from the fuscachelin gene cluster of thermobifida…”. X-ray diffraction, 4 pockets (best druggability 0.59). MolNFT v1 #116543 on GenesisL1: 3D structure, binding sites and…

PDB: 5DH0
Type: protein
Length: 557 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Siderophore periplasmic binding protein
UniProt: Q47NS2
Pockets: 4 · best druggability 0.59

Structure

x-ray diffraction · 2 distinct chains · 46% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	Siderophore periplasmic binding protein	protein	279	46% helix, 19% strand	Q47NS2
A	Siderophore periplasmic binding protein	protein	278	46% helix, 19% strand	Q47NS2

Pockets

4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	339	0.59	0.76	38	empty
2	249	0.58	0.79	37	empty
3	281	0.56	0.76	34	empty
4	55	0.34	0.78	12	empty

Interfaces

1 interface between chains.

B–A · 356 Å² buried · 3 hydrogen bonds · protein-protein

Compared structures

5DH0 · Structure of the siderophore periplasmic binding protein from the fuscachelin gene… · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q47NS2
Elsewhere: RCSB PDB 5DH0 · PDBe 5DH0 · UniProt Q47NS2

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