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Structure of the siderophore periplasmic binding protein from the fuscachelin gene cluster of thermobifida fusca in P41

Analyse Structure of the siderophore periplasmic binding protein from the fuscachelin… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5DH0
Type: protein
Length: 557 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Siderophore periplasmic binding protein
UniProt: Q47NS2
Pockets: 4 · best druggability 0.59

Structure

x-ray diffraction · 2 distinct chains · 46% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	Siderophore periplasmic binding protein	protein	279	46% helix, 19% strand	Q47NS2
A	Siderophore periplasmic binding protein	protein	278	46% helix, 19% strand	Q47NS2

Pockets

4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	339	0.59	0.76	38	empty
2	249	0.58	0.79	37	empty
3	281	0.56	0.76	34	empty
4	55	0.34	0.78	12	empty

Interfaces

1 interface between chains.

B–A · 356 Å² buried · 3 hydrogen bonds · protein-protein

Compared structures

5DH0 · Structure of the siderophore periplasmic binding protein from the fuscachelin gene… · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q47NS2
Elsewhere: RCSB PDB 5DH0 · PDBe 5DH0 · UniProt Q47NS2

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