MolNFT v1 · #116447 · protein

Crystal structure of ispd from bacillus subtilis at 2.30 ångströms resolution, crystal form II

5DDV · 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase: “Crystal structure of ispd from bacillus subtilis at 2.30 ångströms resolution, crystal form II”. X-ray diffraction, 1 pocket (best druggability 0.49). MolNFT v1 #116447 on…

PDB: 5DDV
Type: protein
Length: 223 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
EC: 2.7.7.60
UniProt: Q06755
Pockets: 1 · best druggability 0.49

Structure

x-ray diffraction · 1 distinct chain · 36% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60)	protein	223	36% helix, 27% strand	Q06755

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	140	0.49	0.79	30	empty

Compared structures

5DDV · Crystal structure of IspD from Bacillus subtilis at 2.30 Angstroms resolution, crystal… · the same entry in another collection · chain A against A, TM-score 1.00
Q06755 · AlphaFold monomer V2.0 prediction for 2-C-methyl-D-erythritol 4-phosphate… · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q06755
Elsewhere: RCSB PDB 5DDV · PDBe 5DDV · UniProt Q06755

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