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Crystal structure of ispd from bacillus subtilis at 2.30 ångströms resolution, crystal form II

Analyse Crystal structure of ispd from bacillus subtilis at 2.30 ångströms resolution… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5DDV
Type: protein
Length: 223 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
EC: 2.7.7.60
UniProt: Q06755
Pockets: 1 · best druggability 0.49

Structure

x-ray diffraction · 1 distinct chain · 36% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60)	protein	223	36% helix, 27% strand	Q06755

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	140	0.49	0.79	30	empty

Compared structures

5DDV · Crystal structure of IspD from Bacillus subtilis at 2.30 Angstroms resolution, crystal… · the same entry in another collection · chain A against A, TM-score 1.00
Q06755 · AlphaFold monomer V2.0 prediction for 2-C-methyl-D-erythritol 4-phosphate… · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q06755
Elsewhere: RCSB PDB 5DDV · PDBe 5DDV · UniProt Q06755

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