MolNFT v1 · #116316 · protein
Crystal structure of oxidized dehydroascorbate reductase (osdhar) from oryza sativa L. japonica
5D9V: “Crystal structure of oxidized dehydroascorbate reductase (osdhar) from oryza sativa L. japonica”. X-ray diffraction, 1 ligand (CA), 2 pockets (best druggability 0.44). MolNFT v1 #116316 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5D9V
- Type
- protein
- Length
- 211 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dehydroascorbate reductase
- UniProt
- Q65XA0
- Ligands
- CA
- Pockets
- 2 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Dehydroascorbate reductase | protein | 211 | 51% helix, 11% strand | Q65XA0 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 110 | 0.44 | 0.78 | 23 | empty |
| 2 | 93 | 0.38 | 0.76 | 20 | empty |
Modifications
Observed in the structure: 1 modified (oxidation).
Compared structures
- 5D9V · Crystal structure of oxidized dehydroascorbate reductase (OsDHAR) from Oryza sativa L.… · the same entry in another collection · chain A against A, TM-score 1.00
- Q65XA0 · AlphaFold monomer V2.0 prediction for probable glutathione S-transferase DHAR1, cytosolic… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q65XA0
- Elsewhere: RCSB PDB 5D9V · PDBe 5D9V · UniProt Q65XA0
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.