MolNFT v1 · #116217 · protein
Crystal structure of double tudor domain of human lysine demethylase KDM4A
5D6X · Lysine-specific demethylase 4A: “Crystal structure of double tudor domain of human lysine demethylase KDM4A”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #116217 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5D6X
- Type
- protein
- Length
- 230 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lysine-specific demethylase 4A
- EC
- 1.14.11.-
- UniProt
- O75164
- Ligands
- SO4
Structure
x-ray diffraction · 1 distinct chain · 9% helix, 51% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Lysine-specific demethylase 4A (EC 1.14.11.-) | protein | 115 | 9% helix, 51% strand | O75164 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 811 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
- 5D6X · Crystal structure of double tudor domain of human lysine demethylase KDM4A · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O75164
- Elsewhere: RCSB PDB 5D6X · PDBe 5D6X · UniProt O75164
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