MolNFT v1 · #116005 · protein

Structure of ring finger protein 165

5D0I: “Structure of ring finger protein 165”. X-ray diffraction, 2 ligands (ZN, SO4). MolNFT v1 #116005 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5D0I
Type: protein
Length: 113 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ring finger protein 165
UniProt: Q6ZSG1
Ligands: ZN, SO4

Structure

x-ray diffraction · 2 distinct chains · 22% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ring finger protein 165	protein	62	24% helix, 24% strand	Q6ZSG1
B	Ring finger protein 165	protein	51	20% helix, 20% strand	Q6ZSG1

Ligands and binding sites

ZN · Zinc ion · metal · 4 copies · chains A, B
SO4 · Sulfate ion · ion · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 387 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

5D0I · Structure of RING finger protein 165 · the same entry in another collection · chain A against A, TM-score 1.00
Q6ZSG1 · AlphaFold monomer V2.0 prediction for E3 ubiquitin-protein ligase RNF165 (Q6ZSG1) · a predicted model of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6ZSG1
Elsewhere: RCSB PDB 5D0I · PDBe 5D0I · UniProt Q6ZSG1

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