MolNFT v1 · #115693 · protein
Structure of pneumolysin at 1.98 a resolution
5CR6: “Structure of pneumolysin at 1.98 a resolution”. X-ray diffraction, 5 pockets (best druggability 0.75). MolNFT v1 #115693 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5CR6
- Type
- protein
- Length
- 467 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pneumolysin
- UniProt
- Q04IN8
- Pockets
- 5 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 19% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| D | Pneumolysin | protein | 467 | 19% helix, 43% strand | Q04IN8 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 124 | 0.75 | 0.93 | 26 | empty |
| 2 | 183 | 0.59 | 0.82 | 30 | empty |
| 3 | 113 | 0.43 | 0.77 | 21 | empty |
| 4 | 91 | 0.37 | 0.76 | 19 | empty |
| 5 | 56 | 0.36 | 0.79 | 13 | empty |
Compared structures
- Q04IN8 · AlphaFold monomer V2.0 prediction for pneumolysin (Q04IN8) · a predicted model of the same protein · chain D against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q04IN8
- Elsewhere: RCSB PDB 5CR6 · PDBe 5CR6 · UniProt Q04IN8
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.