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Structure of pneumolysin at 1.98 a resolution

Analyse Structure of pneumolysin at 1.98 a resolution in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5CR6
Type: protein
Length: 467 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pneumolysin
UniProt: Q04IN8
Pockets: 5 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 19% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
D	Pneumolysin	protein	467	19% helix, 43% strand	Q04IN8

Pockets

5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	124	0.75	0.93	26	empty
2	183	0.59	0.82	30	empty
3	113	0.43	0.77	21	empty
4	91	0.37	0.76	19	empty
5	56	0.36	0.79	13	empty

Compared structures

5CR6 · Structure of pneumolysin at 1.98 A resolution · the same entry in another collection · chain D against D, TM-score 1.00
Q04IN8 · AlphaFold monomer V2.0 prediction for pneumolysin (Q04IN8) · a predicted model of the same protein · chain D against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q04IN8
Elsewhere: RCSB PDB 5CR6 · PDBe 5CR6 · UniProt Q04IN8

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