MolNFT v1 · #115668 · protein
Crystal structure of the cancer genomic DNA mutator APOBEC3B
5CQH · DNA dc-du-editing enzyme apobec-3B: “Crystal structure of the cancer genomic DNA mutator APOBEC3B”. X-ray diffraction, 3 ligands (DC, ZN, CL). MolNFT v1 #115668 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5CQH
- Type
- protein
- Length
- 183 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA dc-du-editing enzyme apobec-3B
- EC
- 3.5.4.-
- UniProt
- Q9UH17
- Ligands
- DC, ZN, CL
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA dc-du-editing enzyme apobec-3B (EC 3.5.4.-) | protein | 183 | 39% helix, 22% strand | Q9UH17 |
Ligands and binding sites
- DC · 2'-deoxycytidine-5'-monophosphate · ligand · chains A
- ZN · Zinc ion · metal · chains A
- CL · Chloride ion · ion · chains A
- EDO · 1,2-ethanediol · additive · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- Q9UH17 · AlphaFold monomer V2.0 prediction for DNA dc->du-editing enzyme apobec-3B (Q9UH17) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UH17
- Elsewhere: RCSB PDB 5CQH · PDBe 5CQH · UniProt Q9UH17
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