MolNFT v1 · #115666 · protein
Crystal structure of L-lysine 6-monooxygenase from pseudomonas syringae
5CQF: “Crystal structure of L-lysine 6-monooxygenase from pseudomonas syringae”. X-ray diffraction, 1 ligand (IOD), 2 pockets (best druggability 0.81). MolNFT v1 #115666 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5CQF
- Type
- protein
- Length
- 419 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- L-lysine 6-monooxygenase
- UniProt
- Q881D3
- Ligands
- IOD
- Pockets
- 2 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | L-lysine 6-monooxygenase | protein | 419 | 38% helix, 22% strand | Q881D3 |
Ligands and binding sites
- IOD · Iodide ion · ion · 11 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1045 | 0.81 | 0.82 | 120 | IOD |
| 2 | 58 | 0.37 | 0.78 | 13 | IOD |
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 5CQF · Crystal structure of L-lysine 6-monooxygenase from Pseudomonas syringae · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q881D3
- Elsewhere: RCSB PDB 5CQF · PDBe 5CQF · UniProt Q881D3
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