MolNFT v1 · #115613 · protein

Crystal structure of cc chemokine 5 (CCL5)

5COY · C-C motif chemokine 5: “Crystal structure of cc chemokine 5 (CCL5)”. X-ray diffraction, 3 ligands (GLC, Z9N, PO4). MolNFT v1 #115613 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5COY
Type: protein
Length: 130 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: C-C motif chemokine 5
UniProt: P13501
Ligands: GLC, Z9N, PO4

Structure

x-ray diffraction · 1 distinct chain · 20% helix, 29% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	C-C motif chemokine 5	protein	65	20% helix, 29% strand	P13501

Ligands and binding sites

GLC · alpha-D-glucopyranose · sugar · chains A
Z9N · alpha-D-fructofuranose · sugar · chains A
PO4 · Phosphate ion · ion · 2 copies · chains A, B
PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 707 Å² buried · 14 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

5COY · Crystal structure of CC chemokine 5 (CCL5) · the same entry in another collection · chain A against A, TM-score 1.00
P13501 · AlphaFold monomer V2.0 prediction for C-C motif chemokine 5 (P13501) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P13501
Elsewhere: RCSB PDB 5COY · PDBe 5COY · UniProt P13501

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