MolNFT v1 · #115190 · protein
L28F E.COLI dihydrofolate reductase complexed with 5,10- dideazatetrahydrofolate and oxidized nicotinamide adenine dinucleotide phosphate
5CC9: “L28F E.COLI dihydrofolate reductase complexed with 5,10- dideazatetrahydrofolate and oxidized nicotinamide…”. X-ray diffraction, 2 ligands (NAP, DDF), 2 pockets (best druggability 0.72). MolNFT v1 #115190 on GenesisL1: 3D structure…
- PDB
- 5CC9
- Type
- protein
- Length
- 159 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dihydrofolate reductase
- EC
- 1.5.1.3
- UniProt
- P0ABQ5
- Ligands
- NAP, DDF
- Pockets
- 2 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 28% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Dihydrofolate reductase (EC 1.5.1.3) | protein | 159 | 28% helix, 30% strand | P0ABQ5 |
Ligands and binding sites
- NAP · Nadp nicotinamide-adenine-dinucleotide phosphate · ligand · chains A
- DDF · 5,10-dideazatetrahydrofolic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 331 | 0.72 | 0.84 | 28 | DDF |
| 2 | 87 | 0.35 | 0.75 | 18 | NAP |
Compared structures
- 5CC9 · L28F E.coli dihydrofolate reductase complexed with 5,10-dideazatetrahydrofolate and… · the same entry in another collection · chain A against A, TM-score 1.00
- P0ABQ5 · AlphaFold monomer V2.0 prediction for dihydrofolate reductase (P0ABQ5) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0ABQ5
- Elsewhere: RCSB PDB 5CC9 · PDBe 5CC9 · UniProt P0ABQ5
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