MolNFT v1 · #115176 · protein
Human cyclophilin D complexed with inhibitor
5CBV: “Human cyclophilin D complexed with inhibitor”. X-ray diffraction, 2 ligands (4ZP, K). MolNFT v1 #115176 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5CBV
- Type
- protein
- Length
- 164 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Human cyclophilin D
- UniProt
- P30405
- Ligands
- 4ZP, K
Structure
x-ray diffraction · 1 distinct chain · 15% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Human cyclophilin D | protein | 164 | 15% helix, 32% strand | P30405 |
Ligands and binding sites
- 4ZP · Ethyl N-{[3-(pyridin-3-yl)benzyl]carbamoyl}glycinate · ligand · chains A
- K · Potassium ion · metal
- FMT · Formic acid · additive · chains A
- PG4 · Tetraethylene glycol · additive · chains A
- PGE · Triethylene glycol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- P30405 · AlphaFold monomer V2.0 prediction for peptidyl-prolyl cis-trans isomerase F… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P30405
- Elsewhere: RCSB PDB 5CBV · PDBe 5CBV · UniProt P30405
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