MolNFT v1 · #115156 · protein
Crystal structure of C-as lyase with mercaptoethonal
5CB9 · GLYOXALASE/BLEOMYCIN resistance PROTEIN/DIOXYGENASE: “Crystal structure of C-as lyase with mercaptoethonal”. X-ray diffraction, 2 ligands (NI, CL), 1 pocket (best druggability 0.42). MolNFT v1 #115156 on GenesisL1: 3D structure…
- PDB
- 5CB9
- Type
- protein
- Length
- 118 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- GLYOXALASE/BLEOMYCIN resistance PROTEIN/DIOXYGENASE
- UniProt
- D1A230
- Ligands
- NI, CL
- Pockets
- 1 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 22% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | GLYOXALASE/BLEOMYCIN resistance PROTEIN/DIOXYGENASE | protein | 118 | 22% helix, 38% strand | D1A230 |
Ligands and binding sites
- NI · Nickel (II) ion · metal · chains A
- CL · Chloride ion · ion · chains A
- BME · Beta-mercaptoethanol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 121 | 0.42 | 0.76 | 23 | NI, BME |
Modifications
Observed in the structure: 1 covalent (additive adduct).
Compared structures
- 5CB9 · Crystal structure of C-As lyase with mercaptoethonal · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D1A230
- Elsewhere: RCSB PDB 5CB9 · PDBe 5CB9 · UniProt D1A230
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.