MolNFT v1 · #11508 · protein
Structure of the lectin mpa complexed with T-antigen disaccharide
1JOT · Agglutinin: “Structure of the lectin mpa complexed with T-antigen disaccharide”. X-ray diffraction, 2 ligands (A2G, GAL). MolNFT v1 #11508 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1JOT
- Type
- protein
- Length
- 149 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Agglutinin
- UniProt
- P18674, P18676
- Ligands
- A2G, GAL
Structure
x-ray diffraction · 2 distinct chains · 0% helix, 62% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Agglutinin | protein | 133 | 0% helix, 65% strand | P18674 |
| B | Agglutinin | protein | 16 | 0% helix, 38% strand | P18676 |
Ligands and binding sites
- A2G · 2-acetamido-2-deoxy-alpha-D-galactopyranose · sugar · chains A
- GAL · beta-D-galactopyranose · sugar · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 611 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 1JOT · Structure of the lectin mpa complexed with T-antigen disaccharide · the same entry in another collection · chain A against A, TM-score 1.00
- P18674 · AlphaFold monomer V2.0 prediction for agglutinin alpha chain (P18674) · a predicted model of the same protein · chain A against A, TM-score 1.00
- P18676 · AlphaFold monomer V2.0 prediction for agglutinin beta-2 chain (P18676) · a predicted model of the same protein · chain B against A, TM-score 0.25
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P18674
- Every structure of UniProt P18676
- Elsewhere: RCSB PDB 1JOT · PDBe 1JOT · UniProt P18674 · UniProt P18676
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