MolNFT v1 · #115042 · RNA
5'-monophosphate wt guanine riboswitch bound to hypoxanthine.
5C7U: “5'-monophosphate wt guanine riboswitch bound to hypoxanthine.”. X-ray diffraction, 2 ligands (NCO, HPA), 2 pockets (best druggability 0.67). MolNFT v1 #115042 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5C7U
- Type
- RNA
- Length
- 67 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-monophosphate wt guanine riboswitch
- Ligands
- NCO, HPA
- Pockets
- 2 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | 5'-monophosphate wt guanine riboswitch | rna | 67 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 881 | 0.67 | 0.75 | 36 | NCO |
| 2 | 118 | 0.39 | 0.76 | 19 | HPA |
Compared structures
- 5C7U · 5'-monophosphate wt Guanine Riboswitch bound to hypoxanthine. · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5C7U · PDBe 5C7U
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