MolNFT v1 · #115007 · protein
Human bromodomain and phd finger containing 1, pwwp domain in complex with XST005904A
5C6S · Peregrin: “Human bromodomain and phd finger containing 1, pwwp domain in complex with XST005904A”. X-ray diffraction, 3 ligands (4K8, UNX, CL). MolNFT v1 #115007 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5C6S
- Type
- protein
- Length
- 126 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peregrin
- UniProt
- P55201
- Ligands
- 4K8, UNX, CL
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peregrin | protein | 126 | 36% helix, 24% strand | P55201 |
Ligands and binding sites
- 4K8 · isoquinoline-3-carboxylic acid · ligand · chains A
- UNX · Unknown atom or ion · ion · 15 copies · chains A
- CL · Chloride ion · ion · chains A
- EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5C6S · Human Bromodomain and PHD Finger Containing 1, PWWP domain in complex with XST005904a · the same entry in another collection · chain A against A, TM-score 1.00
- P55201 · AlphaFold monomer V2.0 prediction for peregrin (P55201) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P55201
- Elsewhere: RCSB PDB 5C6S · PDBe 5C6S · UniProt P55201
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