MolNFT v1 · #114988 · protein

Crystal structure of prefusion-stabilized rsv F variant pr-dm

5C69 · Fusion glycoprotein F0,FIBRITIN: “Crystal structure of prefusion-stabilized rsv F variant pr-dm”. X-ray diffraction, 2 ligands (SO4, CL), 2 pockets (best druggability 0.33). MolNFT v1 #114988 on GenesisL1: 3D structure, binding…

PDB: 5C69
Type: protein
Length: 447 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Fusion glycoprotein F0,FIBRITIN
UniProt: P03420, Q38650
Ligands: SO4, CL
Pockets: 2 · best druggability 0.33

Structure

x-ray diffraction · 1 distinct chain · 30% helix, 33% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Fusion glycoprotein F0,FIBRITIN	protein	447	30% helix, 33% strand	P03420, Q38650

Ligands and binding sites

SO4 · Sulfate ion · ion · 7 copies · chains A
CL · Chloride ion · ion · 5 copies · chains A
NHE · 2-[N-cyclohexylamino]ethane sulfonic acid · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	53	0.33	0.77	14	empty
2	67	0.32	0.75	15	CL

Modifications

Observed in the structure: 7 disulfide (disulfide).

Compared structures

5C69 · Crystal Structure of Prefusion-stabilized RSV F variant PR-DM · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P03420
Every structure of UniProt Q38650
Elsewhere: RCSB PDB 5C69 · PDBe 5C69 · UniProt P03420 · UniProt Q38650

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