MolNFT v1 · #114861 · protein
K428A mutant GP2C of large terminase subunit from bacteriophage SF6 with calcium
5C2D · Gene 2 protein: “K428A mutant GP2C of large terminase subunit from bacteriophage SF6 with calcium”. X-ray diffraction, 1 ligand (CA), 2 pockets (best druggability 0.48). MolNFT v1 #114861 on GenesisL1: 3D structure, binding sites…
- PDB
- 5C2D
- Type
- protein
- Length
- 227 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gene 2 protein
- UniProt
- Q716H3
- Ligands
- CA
- Pockets
- 2 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Gene 2 protein | protein | 227 | 43% helix, 19% strand | Q716H3 |
Ligands and binding sites
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 153 | 0.48 | 0.78 | 25 | CA |
| 2 | 135 | 0.38 | 0.73 | 19 | empty |
Compared structures
- 5C2D · K428A mutant gp2c of large terminase subunit from bacteriophage sf6 with calcium · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q716H3
- Elsewhere: RCSB PDB 5C2D · PDBe 5C2D · UniProt Q716H3
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.