MolNFT v1 · #114782 · protein
Crystal structure of kinase
5C01 · Non-receptor tyrosine-protein kinase TYK2: “Crystal structure of kinase”. X-ray diffraction, 1 ligand (UNL), 5 pockets (best druggability 0.71). MolNFT v1 #114782 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5C01
- Type
- protein
- Length
- 518 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Non-receptor tyrosine-protein kinase TYK2
- EC
- 2.7.10.2
- UniProt
- P29597
- Ligands
- UNL
- Pockets
- 5 · best druggability 0.71
Structure
x-ray diffraction · 2 distinct chains · 40% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Non-receptor tyrosine-protein kinase TYK2 (EC 2.7.10.2) | protein | 258 | 41% helix, 19% strand | P29597 |
| B | Non-receptor tyrosine-protein kinase TYK2 (EC 2.7.10.2) | protein | 260 | 40% helix, 20% strand | P29597 |
Ligands and binding sites
- UNL · Unknown ligand · ligand · 2 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 3 copies · chains A, B
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 419 | 0.71 | 0.82 | 49 | UNL |
| 2 | 513 | 0.71 | 0.80 | 51 | UNL |
| 3 | 103 | 0.47 | 0.80 | 17 | empty |
| 4 | 91 | 0.45 | 0.80 | 17 | empty |
| 5 | 145 | 0.40 | 0.73 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 330 Ų buried · 10 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P29597
- Elsewhere: RCSB PDB 5C01 · PDBe 5C01 · UniProt P29597
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.