MolNFT v1 · #114735 · protein

Computationally designed left-handed ALPHA/ALPHA toroid with 12 repeats

5BYO · DTOR_12X31L: “Computationally designed left-handed ALPHA/ALPHA toroid with 12 repeats”. X-ray diffraction, 8 pockets (best druggability 0.54). MolNFT v1 #114735 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5BYO
Type: protein
Length: 744 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DTOR_12X31L
Pockets: 8 · best druggability 0.54

Structure

x-ray diffraction · 1 distinct chain · 80% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	DTOR_12X31L	protein	372	80% helix, 0% strand	—

Pockets

8 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	359	0.54	0.74	63	empty
2	240	0.45	0.73	41	empty
3	186	0.43	0.73	39	empty
4	164	0.41	0.73	43	empty
5	116	0.36	0.73	27	empty

Compared structures

5BYO · Computationally designed left-handed alpha/alpha toroid with 12 repeats · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 5BYO · PDBe 5BYO

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