Research workbench
Computationally designed left-handed ALPHA/ALPHA toroid with 12 repeats
Analyse Computationally designed left-handed ALPHA/ALPHA toroid with 12 repeats in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5BYO
- Type
- protein
- Length
- 744 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DTOR_12X31L
- Pockets
- 8 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain · 80% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | DTOR_12X31L | protein | 372 | 80% helix, 0% strand | — |
Pockets
8 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 359 | 0.54 | 0.74 | 63 | empty |
| 2 | 240 | 0.45 | 0.73 | 41 | empty |
| 3 | 186 | 0.43 | 0.73 | 39 | empty |
| 4 | 164 | 0.41 | 0.73 | 43 | empty |
| 5 | 116 | 0.36 | 0.73 | 27 | empty |
Compared structures
- 5BYO · Computationally designed left-handed alpha/alpha toroid with 12 repeats · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5BYO · PDBe 5BYO
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