MolNFT v1 · #114645 · protein

Crystal structure of thermoanaerobacterium xylolyticum GH116 beta- glucosidase

5BVU · Beta-glucosidase: “Crystal structure of thermoanaerobacterium xylolyticum GH116 beta- glucosidase”. X-ray diffraction, 1 ligand (CA), 6 pockets (best druggability 0.54). MolNFT v1 #114645 on GenesisL1: 3D structure, binding sites…

PDB: 5BVU
Type: protein
Length: 769 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Beta-glucosidase
EC: 3.2.1.21
UniProt: F6BL85
Ligands: CA
Pockets: 6 · best druggability 0.54

Structure

x-ray diffraction · 1 distinct chain · 31% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Beta-glucosidase (EC 3.2.1.21)	protein	769	31% helix, 23% strand	F6BL85

Ligands and binding sites

CA · Calcium ion · metal · chains A
GOL · Glycerol · additive · 16 copies · chains A
EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	160	0.54	0.80	29	GOL
2	122	0.42	0.76	21	empty
3	94	0.37	0.76	25	empty
4	80	0.34	0.74	19	GOL
5	60	0.32	0.76	12	GOL

Compared structures

5BVU · Crystal structure of Thermoanaerobacterium xylolyticum GH116 beta-glucosidase · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt F6BL85
Elsewhere: RCSB PDB 5BVU · PDBe 5BVU · UniProt F6BL85

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