MolNFT v1 · #114587 · protein
HK620 tail needle crystallized at pH 9 (crystal form I)
5BU5 · DNA stabilization protein: “HK620 tail needle crystallized at pH 9 (crystal form I)”. X-ray diffraction, 2 ligands (CA, CL). MolNFT v1 #114587 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5BU5
- Type
- protein
- Length
- 1,044 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA stabilization protein
- UniProt
- Q9AYZ3
- Ligands
- CA, CL
Structure
x-ray diffraction · 1 distinct chain · 61% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | DNA stabilization protein | protein | 174 | 61% helix, 11% strand | Q9AYZ3 |
Ligands and binding sites
- CA · Calcium ion · metal · 2 copies · chains A, B, C, D, E, F
- CL · Chloride ion · ion · 2 copies · chains A, B, C, D, E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
6 interfaces between chains.
- E–F · 4123 Ų buried · 83 hydrogen bonds · protein-protein
- D–F · 4103 Ų buried · 91 hydrogen bonds · protein-protein
- D–E · 4098 Ų buried · 84 hydrogen bonds · protein-protein
- B–C · 4098 Ų buried · 85 hydrogen bonds · protein-protein
- A–B · 4089 Ų buried · 87 hydrogen bonds · protein-protein
Compared structures
- 5BU5 · HK620 Tail Needle crystallized at pH 9 (crystal form I) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9AYZ3
- Elsewhere: RCSB PDB 5BU5 · PDBe 5BU5 · UniProt Q9AYZ3
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