MolNFT v1 · #114583 · protein

Structure of the truncated C-terminal domain of LPG1496 from legionella pneumophila

5BU1: “Structure of the truncated C-terminal domain of LPG1496 from legionella pneumophila”. X-ray diffraction, 2 pockets (best druggability 0.51). MolNFT v1 #114583 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5BU1
Type: protein
Length: 284 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: LPG1496
UniProt: G8UY02
Pockets: 2 · best druggability 0.51

Structure

x-ray diffraction · 1 distinct chain · 62% helix, 4% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	LPG1496	protein	284	62% helix, 4% strand	G8UY02

Ligands and binding sites

MLI · Malonate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	244	0.51	0.75	29	empty
2	50	0.37	0.80	17	empty

Compared structures

5BU1 · Structure of the truncated C-terminal domain of lpg1496 from Legionella pneumophila · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt G8UY02
Elsewhere: RCSB PDB 5BU1 · PDBe 5BU1 · UniProt G8UY02

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