MolNFT v1 · #114498 · protein
Crystal structure of an uncharacterized protein with similarity to peptidase yeaz from pseudomonas aeruginosa
5BR9: “Crystal structure of an uncharacterized protein with similarity to peptidase yeaz from pseudomonas aeruginosa”. X-ray diffraction, 13 pockets (best druggability 0.78). MolNFT v1 #114498 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5BR9
- Type
- protein
- Length
- 1,081 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- Q9HXV5
- Pockets
- 13 · best druggability 0.78
Structure
x-ray diffraction · 4 distinct chains · 35% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 217 | 34% helix, 30% strand | Q9HXV5 |
| B, E | Uncharacterized protein | protein | 216 | 36% helix, 28% strand | Q9HXV5 |
| C | Uncharacterized protein | protein | 218 | 35% helix, 28% strand | Q9HXV5 |
| D | Uncharacterized protein | protein | 214 | 34% helix, 31% strand | Q9HXV5 |
Pockets
13 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 595 | 0.78 | 0.84 | 69 | empty |
| 2 | 988 | 0.78 | 0.80 | 90 | empty |
| 3 | 281 | 0.60 | 0.78 | 29 | empty |
| 4 | 72 | 0.58 | 0.88 | 20 | empty |
| 5 | 115 | 0.57 | 0.84 | 18 | empty |
Interfaces
6 interfaces between chains.
- B–C · 914 Ų buried · 6 hydrogen bonds · protein-protein
- A–D · 884 Ų buried · 3 hydrogen bonds · protein-protein
- A–B · 511 Ų buried · 8 hydrogen bonds · protein-protein
- C–D · 475 Ų buried · 7 hydrogen bonds · protein-protein
- B–E · 375 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 5BR9 · Crystal structure of an uncharacterized protein with similarity to peptidase YEAZ from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HXV5
- Elsewhere: RCSB PDB 5BR9 · PDBe 5BR9 · UniProt Q9HXV5
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