Research workbench
Crystal structure of an uncharacterized protein with similarity to peptidase yeaz from pseudomonas aeruginosa
Analyse Crystal structure of an uncharacterized protein with similarity to peptidase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5BR9
- Type
- protein
- Length
- 1,081 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- Q9HXV5
- Pockets
- 13 · best druggability 0.78
Structure
x-ray diffraction · 4 distinct chains · 35% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 217 | 34% helix, 30% strand | Q9HXV5 |
| B, E | Uncharacterized protein | protein | 216 | 36% helix, 28% strand | Q9HXV5 |
| C | Uncharacterized protein | protein | 218 | 35% helix, 28% strand | Q9HXV5 |
| D | Uncharacterized protein | protein | 214 | 34% helix, 31% strand | Q9HXV5 |
Pockets
13 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 595 | 0.78 | 0.84 | 69 | empty |
| 2 | 988 | 0.78 | 0.80 | 90 | empty |
| 3 | 281 | 0.60 | 0.78 | 29 | empty |
| 4 | 72 | 0.58 | 0.88 | 20 | empty |
| 5 | 115 | 0.57 | 0.84 | 18 | empty |
Interfaces
6 interfaces between chains.
- B–C · 914 Ų buried · 6 hydrogen bonds · protein-protein
- A–D · 884 Ų buried · 3 hydrogen bonds · protein-protein
- A–B · 511 Ų buried · 8 hydrogen bonds · protein-protein
- C–D · 475 Ų buried · 7 hydrogen bonds · protein-protein
- B–E · 375 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 5BR9 · Crystal structure of an uncharacterized protein with similarity to peptidase YEAZ from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HXV5
- Elsewhere: RCSB PDB 5BR9 · PDBe 5BR9 · UniProt Q9HXV5
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