MolNFT v1 · #114496 · protein
Structure of udp-galactopyranose mutase from corynebacterium diphtheriae in complex with citrate ion
5BR7: “Structure of udp-galactopyranose mutase from corynebacterium diphtheriae in complex with citrate ion”. X-ray diffraction, 2 ligands (FAD, NA), 2 pockets (best druggability 0.82). MolNFT v1 #114496 on GenesisL1: 3D structure, binding…
- PDB
- 5BR7
- Type
- protein
- Length
- 386 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Udp-galactopyranose mutase
- EC
- 5.4.99.9
- UniProt
- Q6NER4
- Ligands
- FAD, NA
- Pockets
- 2 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Udp-galactopyranose mutase (EC 5.4.99.9) | protein | 386 | 39% helix, 19% strand | Q6NER4 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · chains A
- NA · Sodium ion · metal · 2 copies · chains A
- EDO · 1,2-ethanediol · additive · 4 copies · chains A
- IPA · Isopropyl alcohol · additive · 3 copies · chains A
- FLC · Citrate anion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1099 | 0.82 | 0.83 | 92 | FAD, NA, FLC |
| 2 | 109 | 0.40 | 0.76 | 21 | empty |
Compared structures
- 5BR7 · Structure of UDP-galactopyranose mutase from Corynebacterium diphtheriae in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6NER4
- Elsewhere: RCSB PDB 5BR7 · PDBe 5BR7 · UniProt Q6NER4
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.