MolNFT v1 · #114344 · protein
Crystal structure of phosphoglucomutase from xanthomonas citri complexed with glucose-1-phosphate
5BMP: “Crystal structure of phosphoglucomutase from xanthomonas citri complexed with glucose-1-phosphate”. X-ray diffraction, 2 ligands (G1P, MG), 3 pockets (best druggability 0.75). MolNFT v1 #114344 on GenesisL1: 3D structure, binding…
- PDB
- 5BMP
- Type
- protein
- Length
- 449 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphoglucomutase
- EC
- 5.4.2.2
- UniProt
- Q8PGN7
- Ligands
- G1P, MG
- Pockets
- 3 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphoglucomutase (EC 5.4.2.2) | protein | 449 | 40% helix, 21% strand | Q8PGN7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 491 | 0.75 | 0.84 | 50 | G1P |
| 2 | 67 | 0.35 | 0.77 | 13 | empty |
| 3 | 72 | 0.31 | 0.74 | 15 | empty |
Modifications
Observed in the structure: 1 modified (phosphorylation).
Compared structures
- 5BMP · Crystal Structure of Phosphoglucomutase from Xanthomonas citri complexed with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8PGN7
- Elsewhere: RCSB PDB 5BMP · PDBe 5BMP · UniProt Q8PGN7
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.