MolNFT v1 · #114293 · protein

Rrm-like domain of dead-box protein, csda

5B88 · ATP-dependent RNA helicase dead: “Rrm-like domain of dead-box protein, csda”. Solution nmr, 1 pocket (best druggability 0.69). MolNFT v1 #114293 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5B88
Type: protein
Length: 85 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: ATP-dependent RNA helicase dead
EC: 3.6.4.13
UniProt: P0A9P6
Pockets: 1 · best druggability 0.69

Structure

solution nmr · 1 distinct chain · 18% helix, 9% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	ATP-dependent RNA helicase dead (EC 3.6.4.13)	protein	85	18% helix, 9% strand	P0A9P6

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	305	0.69	0.83	29	empty

Compared structures

5B88 · RRM-like domain of DEAD-box protein, CsdA · the same entry in another collection · chain A against A, TM-score 1.00
P0A9P6 · AlphaFold monomer V2.0 prediction for ATP-dependent RNA helicase dead (P0A9P6) · a predicted model of the same protein · chain A against A, TM-score 0.66

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0A9P6
Elsewhere: RCSB PDB 5B88 · PDBe 5B88 · UniProt P0A9P6

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