MolNFT v1 · #114232 · protein
Structural details of UFD1 binding to P97
5B6C · Transitional endoplasmic reticulum ATPase: “Structural details of UFD1 binding to P97”. X-ray diffraction. MolNFT v1 #114232 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5B6C
- Type
- protein
- Length
- 185 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Transitional endoplasmic reticulum ATPase; Peptide from ubiquitin fusion degradation…
- EC
- 3.6.4.6
- UniProt
- P55072, C9JNP9
Structure
x-ray diffraction · 2 distinct chains · 15% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transitional endoplasmic reticulum ATPase (EC 3.6.4.6) | protein | 174 | 16% helix, 37% strand | P55072 |
| B | Peptide from ubiquitin fusion degradation protein 1 homolog | protein | 11 | 0% helix, 9% strand | C9JNP9 |
Interfaces
1 interface between chains.
- A–B · 691 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 5B6C · Structural Details of Ufd1 binding to p97 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P55072
- Every structure of UniProt C9JNP9
- Elsewhere: RCSB PDB 5B6C · PDBe 5B6C · UniProt P55072 · UniProt C9JNP9
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